Basic Information
Locus ID:
BniB08g074420.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
citrate synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 65721266 | 65721998 | + | BniB08g074420.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 11,954.82 Da | 29.32 | 99.24 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00285 | Citrate synthase, C-terminal domain | 19 | 75 | 4.4E-8 | IPR002020 |
| SUPERFAMILY | SSF48256 | Citrate synthase | 15 | 96 | 2.36E-14 | IPR036969 |
| Gene3D | G3DSA:1.10.230.10 | - | 2 | 63 | 4.0E-9 | IPR016143 |
| PRINTS | PR00143 | Citrate synthase signature | 65 | 79 | 1.5E-6 | IPR002020 |
| PRINTS | PR00143 | Citrate synthase signature | 44 | 60 | 1.5E-6 | IPR002020 |
Gene Ontology
KEGG Pathway
Pathway:
ko00020 (Citrate cycle (TCA cycle))
map00020 (Citrate cycle (TCA cycle))
ko00630 (Glyoxylate and dicarboxylate metabolism)
map00630 (Glyoxylate and dicarboxylate metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko01210 (2-Oxocarboxylic acid metabolism)
map01210 (2-Oxocarboxylic acid metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60100.1 | citrate synthase 5. | 0 |
| RefSeq | XP_024012778.1 | citrate synthase 5, mitochondrial [Eutrema salsugineum] | 0 |
| Q9M1D3 | Citrate synthase 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CSY5 PE=1 SV=2 | 0 | |
| TrEMBL | V4LNP9 | Citrate synthase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005966mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15626, jg4026 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_11594, gene_5093, gene_5095, gene_9976 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005060 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g073550 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17843, Sbi_jg62468 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1042 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007191, GOSA_00007198 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl59164 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000028608, gene:ENSEOMG00000029681 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0002090 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30051110 |
| Apiaceae | Apium graveolens | 1 | Ag1G01028 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G006700 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714943, gene-LOC120103817 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.728.V1.1, AsparagusV1_09.1319.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G21228 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G14590.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10017599m.g.v1.0, Thhalv10027440m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g12690.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g021850.2N, BniB08g074420.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0935 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0934 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g05730 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08510 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-396 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.151 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.422, BH04.454, CH04.447 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0671340, gene-QOZ80_9BG0694820 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0349060.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_064719 |
| Poaceae | Oryza coarctata | 2 | Oco21G002170, Oco22G003000 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g07030.1, LOC_Os11g40750.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G078100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr07G020590, Chr16G010160, Chr17G009250, Chr31G001630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G176100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG032800, gene_TRIDC4BG017020 |
| Poaceae | Triticum aestivum | 2 | TraesCS4A02G206300.1.cds1, TraesCS4D02G107300.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb091720_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27144 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18472 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2469, evm.TU.LG17.1513 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g19850, gene.Posoc05g19860 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.1002 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19605, nbisL1-mrna-30014 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3511 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16366 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000015l.255 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015263 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4501 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20793 |
| Salicaceae | Populus euphratica | 1 | populus_peu01765 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132601549 |
| Solanaceae | Solanum chilense | 1 | SOLCI002970700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021634 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6559 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1477 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11590.v3.1 |