Basic Information
Locus ID:
BniB08g074300.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
kelch repeat-containing F-box family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 65677087 | 65678331 | + | BniB08g074300.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 45,672.10 Da | 56.05 | 67.51 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 200 | 241 | 4.8E-11 | IPR006652 |
| Pfam | PF00646 | F-box domain | 19 | 59 | 3.3E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 63 | 3.92E-8 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 118 | 378 | 8.76E-35 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 90 | 363 | 2.0E-33 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 59 | 4.2E-5 | - |
| SMART | SM00256 | fbox_2 | 23 | 63 | 8.4E-6 | IPR001810 |
| SMART | SM00612 | kelc_smart | 208 | 255 | 3.7E-7 | IPR006652 |
| SMART | SM00612 | kelc_smart | 157 | 206 | 0.051 | IPR006652 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 111 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_018492724.1 | PREDICTED: F-box/kelch-repeat protein SKIP20 [Raphanus sativus] | 0 |
| Q9M1Y1 | F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana OX=3702 GN=SKIP20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7PUE4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_077868 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology