Basic Information
Locus ID:
BniB08g072760.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 64913615 | 64914718 | + | BniB08g072760.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 35,205.80 Da | 41.48 | 66.43 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 177 | 305 | 4.83253E-64 | - |
| CDD | cd16571 | RING-HC_SIAHs | 61 | 99 | 5.20453E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 105 | 304 | 8.3E-81 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 52 | 105 | 3.3E-7 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 116 | 308 | 9.81E-48 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 115 | 2.4E-9 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 170 | 304 | 1.1E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 169 | 1.2E-17 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 116 | 176 | 14.313501 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 63 | 99 | 9.686208 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_018443004.1 | PREDICTED: E3 ubiquitin-protein ligase SINAT2 [Raphanus sativus] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7PW43 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_077646 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology