HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: BniB08g072480.2N
Species & Taxonomic ID: Brassica nigra & 3710
Genome Assembly: N100
Description: Inactive serine threonine-protein kinase At1g67470-like
Maps and Mapping Data
Chromosome Start End Strand ID
B8 64821132 64822045 + BniB08g072480.2N
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.92 29,459.71 Da 40.06 87.90 -0.27
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF07714 Protein tyrosine and serine/threonine kinase 31 125 2.4E-6 IPR001245
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 30 250 2.42E-15 IPR011009
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 137 257 4.7E-10 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 9 127 3.1E-12 -
Gene Ontology
Biological Process:
GO:0006468 (protein phosphorylation)
Molecular Function:
GO:0004672 (protein kinase activity)
KEGG Pathway
KO Term:
K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])
Pathway:
ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G57700.1 Protein kinase superfamily protein. 0
RefSeq XP_048597186.1 serine/threonine-protein kinase ZRK7-like [Brassica napus] 0
Swiss-Prot F4J3H7 Serine/threonine-protein kinase ZRK7 OS=Arabidopsis thaliana OX=3702 GN=ZRK7 PE=2 SV=1 0
TrEMBL A0A816PGH7 (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_A09P50550.1 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Atriplex hortensis 5 Ah007088, Ah011556, Ah031728, Ah031729, Ah031730
Amaranthaceae Beta vulgaris 3 BVRB_6g142290, BVRB_9g210510, BVRB_9g210520
Amaranthaceae Salicornia bigelovii 6 Sbi_jg11963, Sbi_jg19328, Sbi_jg19329, Sbi_jg19330 ...
Sbi_jg43889, Sbi_jg46895
Amaranthaceae Salicornia europaea 4 Seu_jg18034, Seu_jg18035, Seu_jg21182, Seu_jg21183
Amaranthaceae Suaeda glauca 12 Sgl54870, Sgl65478, Sgl65485, Sgl65499, Sgl65503, Sgl69828 ...
Sgl69838, Sgl69842, Sgl69956, Sgl69957, Sgl80366, Sgl82828
Amaranthaceae Chenopodium album 9 gene:ENSEOMG00000016917, gene:ENSEOMG00000018381 ...
gene:ENSEOMG00000018988, gene:ENSEOMG00000049020, gene:ENSEOMG00000049372, gene:ENSEOMG00000051141, gene:ENSEOMG00000051313, gene:ENSEOMG00000051838, gene:ENSEOMG00000052266
Amaranthaceae Chenopodium quinoa 5 CQ.Regalona.r1.2AG0000600, CQ.Regalona.r1.2BG0001960 ...
CQ.Regalona.r1.9AG0010160, CQ.Regalona.r1.9AG0010170, CQ.Regalona.r1.9BG0012290
Anacardiaceae Pistacia vera 4 pistato.v30083920, pistato.v30084020, pistato.v30186420 ...
pistato.v30213430
Brassicaceae Arabidopsis thaliana 8 AT3G52530.1, AT3G57700.1, AT3G57710.1, AT3G57720.1 ...
AT3G57730.1, AT3G57740.1, AT3G57750.1, AT3G57770.1
Brassicaceae Eutrema salsugineum 10 Thhalv10000211m.g.v1.0, Thhalv10006056m.g.v1.0 ...
Thhalv10006070m.g.v1.0, Thhalv10006071m.g.v1.0, Thhalv10006089m.g.v1.0, Thhalv10006091m.g.v1.0, Thhalv10006097m.g.v1.0, Thhalv10006099m.g.v1.0, Thhalv10006391m.g.v1.0, Thhalv10006481m.g.v1.0
Brassicaceae Schrenkiella parvula 4 Sp3g24520.v2.2, Sp5g04920.v2.2, Sp5g04930.v2.2 ...
Sp6g08210.v2.2
Brassicaceae Brassica nigra 32 BniB02g036190.2N, BniB03g025360.2N, BniB05g018230.2N ...
BniB05g058470.2N, BniB05g074590.2N, BniB06g001150.2N, BniB06g001410.2N, BniB06g049460.2N, BniB06g055490.2N, BniB06g055510.2N, BniB06g055520.2N, BniB06g055530.2N, BniB06g055550.2N, BniB06g063790.2N, BniB06g063800.2N, BniB06g063810.2N, BniB06g063820.2N, BniB06g063830.2N, BniB06g066000.2N, BniB08g015940.2N, BniB08g035220.2N, BniB08g040070.2N, BniB08g066680.2N, BniB08g072460.2N, BniB08g072470.2N, BniB08g072480.2N, BniB08g072490.2N, BniB08g072500.2N, BniB08g072510.2N, BniB08g072520.2N, BniB08g072530.2N, BniB08g072540.2N
Casuarinaceae Casuarina equisetifolia 3 Ceq06G0281, Ceq06G0404, Ceq06G0405
Casuarinaceae Casuarina glauca 2 Cgl06G0419, Cgl06G0420
Portulacaceae Portulaca oleracea 3 evm.TU.LG04.1372, evm.TU.LG05.1895, evm.TU.LG10.866
Rhizophoraceae Bruguiera sexangula 4 evm.TU.Scaffold_10_RagTag.1248, evm.TU.Scaffold_1_RagTag.397 ...
evm.TU.Scaffold_1_RagTag.398, evm.TU.Scaffold_2_RagTag.1852
Rhizophoraceae Carallia pectinifolia 4 nbisL1-mrna-1836, nbisL1-mrna-7787, nbisL1-mrna-7789 ...
nbisL1-mrna-7791
Rhizophoraceae Ceriops tagal 4 nbisL1-mrna-13821, nbisL1-mrna-13822, nbisL1-mrna-16095 ...
nbisL1-mrna-9956
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-13855, nbisL1-mrna-5431
Rhizophoraceae Kandelia candel 2 add.evm.TU.utg000004l.146, add.evm.TU.utg000012l.91
Rhizophoraceae Kandelia obovata 1 Maker00010947
Rhizophoraceae Rhizophora apiculata 4 nbisL1-mrna-20136, nbisL1-mrna-20137, nbisL1-mrna-21932 ...
nbisL1-mrna-23401
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-18028, nbisL1-mrna-546
Salicaceae Populus euphratica 3 populus_peu33164, populus_peu33177, populus_peu38451
Solanaceae Lycium barbarum 3 gene-LOC132610019, gene-LOC132610370, gene-LOC132610523
Solanaceae Solanum chilense 3 SOLCI003675800, SOLCI003675900, SOLCI004975100
Solanaceae Solanum pennellii 2 gene-LOC107021246, gene-LOC114077545
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.