halophFGD

Basic Information

Locus ID: BniB08g072430.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: F-box associated

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B8	64804987	64806219	-	BniB08g072430.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.33	35,205.32 Da	31.64	93.83	-0.16

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	15	52	1.3E-7	IPR001810
Pfam	PF07734	F-box associated	149	272	1.2E-5	IPR006527
SUPERFAMILY	SSF81383	F-box domain	13	85	3.53E-11	IPR036047
SUPERFAMILY	SSF50965	Galactose oxidase, central domain	105	231	2.48E-7	IPR011043
Gene3D	G3DSA:1.20.1280.50	-	1	134	3.4E-6	-
SMART	SM00256	fbox_2	16	56	6.8E-6	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	85	268	2.4E-16	IPR017451
ProSiteProfiles	PS50181	F-box domain profile.	10	60	10.000863	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G10340.1	F-box family protein.	0
RefSeq	XP_033136008.1	F-box protein At1g11270-like [Brassica rapa]	0
Swiss-Prot	Q9LX89	F-box protein At5g10340 OS=Arabidopsis thaliana OX=3702 GN=At5g10340 PE=2 SV=1	0
TrEMBL	A0A397Y1B7	F-box domain-containing protein OS=Brassica campestris OX=3711 GN=BRARA_I03992 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	15	AT1G09650.1, AT1G11270.1, AT1G12490.1, AT1G12855.1 ... AT1G12870.1, AT1G13200.1, AT1G14315.2, AT1G15015.1, AT2G02030.1, AT2G05600.1, AT2G34280.1, AT3G25550.1, AT4G01640.1, AT5G10340.1, AT5G16285.1
Brassicaceae	Eutrema salsugineum	30	Thhalv10000283m.g.v1.0, Thhalv10002950m.g.v1.0 ... Thhalv10003053m.g.v1.0, Thhalv10005403m.g.v1.0, Thhalv10005596m.g.v1.0, Thhalv10005640m.g.v1.0, Thhalv10005659m.g.v1.0, Thhalv10005704m.g.v1.0, Thhalv10006448m.g.v1.0, Thhalv10006469m.g.v1.0, Thhalv10007816m.g.v1.0, Thhalv10007821m.g.v1.0, Thhalv10009459m.g.v1.0, Thhalv10009591m.g.v1.0, Thhalv10009680m.g.v1.0, Thhalv10009780m.g.v1.0, Thhalv10009873m.g.v1.0, Thhalv10010027m.g.v1.0, Thhalv10011073m.g.v1.0, Thhalv10012265m.g.v1.0, Thhalv10016004m.g.v1.0, Thhalv10017550m.g.v1.0, Thhalv10017844m.g.v1.0, Thhalv10021927m.g.v1.0, Thhalv10021998m.g.v1.0, Thhalv10022335m.g.v1.0, Thhalv10023120m.g.v1.0, Thhalv10026946m.g.v1.0, Thhalv10028258m.g.v1.0, Thhalv10028312m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g27610.v2.2, Sp2g14700.v2.2, Sp6g09040.v2.2 ... SpUn0138_0020.v2.2
Brassicaceae	Brassica nigra	27	BniB01g008490.2N, BniB02g006100.2N, BniB02g006160.2N ... BniB02g007700.2N, BniB02g007710.2N, BniB02g007720.2N, BniB02g007750.2N, BniB02g042290.2N, BniB02g042300.2N, BniB02g044690.2N, BniB02g052300.2N, BniB03g005530.2N, BniB03g006010.2N, BniB03g015920.2N, BniB03g022450.2N, BniB04g008600.2N, BniB04g009830.2N, BniB04g009870.2N, BniB04g014510.2N, BniB04g027260.2N, BniB04g039550.2N, BniB04g054100.2N, BniB04g054110.2N, BniB05g015500.2N, BniB05g065960.2N, BniB07g019140.2N, BniB08g072430.2N
Plantaginaceae	Plantago ovata	1	Pov_00035511