Basic Information
Locus ID:
BniB08g071170.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 64165047 | 64166003 | + | BniB08g071170.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.25 | 35,015.25 Da | 69.75 | 55.25 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 189 | 230 | 3.15801E-24 | - |
| Pfam | PF14369 | zinc-ribbon | 6 | 37 | 9.1E-12 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 188 | 230 | 3.5E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 172 | 235 | 6.19E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 236 | 1.0E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 189 | 229 | 3.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 189 | 230 | 12.40076 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 257 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013601977.1 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Brassica oleracea var. oleracea] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7TXF4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_077609 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology