Basic Information
Locus ID:
BniB08g070500.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Regulator of chromosome condensation (RCC1) repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 63840977 | 63843373 | - | BniB08g070500.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 74,286.58 Da | 32.74 | 86.39 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 370 | 584 | 2.1E-42 | IPR000719 |
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 202 | 230 | 8.6E-8 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 347 | 659 | 5.13E-71 | IPR011009 |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 41 | 268 | 1.09E-22 | IPR009091 |
| Gene3D | G3DSA:2.130.10.30 | - | 186 | 315 | 1.1E-14 | IPR009091 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 329 | 449 | 4.6E-34 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 450 | 670 | 1.4E-48 | - |
| Gene3D | G3DSA:2.130.10.30 | - | 19 | 184 | 4.2E-8 | IPR009091 |
| SMART | SM00220 | serkin_6 | 369 | 663 | 6.6E-24 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 369 | 663 | 35.820515 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 500 | 512 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 375 | 397 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55950.1 | CRINKLY4 related 3. | 0 |
| RefSeq | XP_013655930.1 | putative serine/threonine-protein kinase-like protein CCR3 [Brassica napus] | 0 |
| Q9LY50 | Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana OX=3702 GN=CCR3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A078GRH9 | BnaA09g35490D protein OS=Brassica napus OX=3708 GN=BnaA09g35490D PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology