Basic Information
Locus ID:
BniB08g069190.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 63143219 | 63145686 | + | BniB08g069190.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 71,651.93 Da | 37.61 | 102.03 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 252 | 316 | 1.93621E-22 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 564 | 603 | 4.3E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 483 | 521 | 1.9E-5 | IPR000225 |
| Pfam | PF04564 | U-box domain | 293 | 340 | 4.6E-7 | IPR003613 |
| Pfam | PF04564 | U-box domain | 248 | 272 | 5.1E-7 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 400 | 439 | 2.3E-10 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 370 | 644 | 1.84E-48 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 248 | 345 | 5.55E-22 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 361 | 461 | 4.7E-24 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 550 | 649 | 2.4E-12 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 246 | 343 | 8.2E-25 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 462 | 547 | 1.4E-16 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 251 | 336 | 2.8E-22 | IPR003613 |
| SMART | SM00185 | arm_5 | 564 | 604 | 0.74 | IPR000225 |
| SMART | SM00185 | arm_5 | 400 | 440 | 1.1E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 441 | 481 | 0.42 | IPR000225 |
| SMART | SM00185 | arm_5 | 523 | 563 | 270.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 482 | 522 | 5.5 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 452 | 494 | 8.5924 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 247 | 343 | 32.536251 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 411 | 453 | 13.5974 | IPR000225 |
| Coils | Coil | Coil | 630 | 650 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_009116165.1 | U-box domain-containing protein 14 [Brassica rapa] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8BC22 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_000153 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology