Basic Information
Locus ID:
BniB08g068420.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Josephin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 62686744 | 62689999 | - | BniB08g068420.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 54,901.80 Da | 43.51 | 93.81 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02453 | Reticulon | 317 | 470 | 5.8E-44 | IPR003388 |
| Pfam | PF02099 | Josephin | 15 | 172 | 6.4E-49 | IPR006155 |
| Gene3D | G3DSA:3.90.70.40 | - | 19 | 178 | 2.8E-61 | - |
| Gene3D | G3DSA:1.10.287.10 | - | 33 | 79 | 2.8E-61 | - |
| SMART | SM01246 | Josephin_2 | 14 | 175 | 1.3E-77 | IPR006155 |
| ProSiteProfiles | PS50957 | Josephin domain profile. | 7 | 187 | 25.348696 | IPR006155 |
| ProSiteProfiles | PS50845 | Reticulon domain profile. | 317 | 485 | 26.985102 | IPR003388 |
| PRINTS | PR01233 | Josephin signature | 73 | 92 | 2.3E-26 | - |
| PRINTS | PR01233 | Josephin signature | 134 | 154 | 2.3E-26 | - |
| PRINTS | PR01233 | Josephin signature | 11 | 34 | 2.3E-26 | - |
| PRINTS | PR01233 | Josephin signature | 158 | 177 | 2.3E-26 | - |
| PRINTS | PR01233 | Josephin signature | 113 | 132 | 2.3E-26 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 231 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54130.1 | Josephin family protein. | 0 |
| RefSeq | XP_018492708.1 | PREDICTED: ataxin-3 homolog [Raphanus sativus] | 0 |
| Q9M391 | Ataxin-3 homolog OS=Arabidopsis thaliana OX=3702 GN=At3g54130 PE=1 SV=1 | 0 | |
| TrEMBL | M4DEB8 | Reticulon-like protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg32150 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15396 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002208 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g112710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31962, Sbi_jg57377 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25089 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00028271 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54007, Sgl59339 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008220, gene:ENSEOMG00000021736 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0014110, CQ.Regalona.r1.5BG0015330 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30285330 |
| Apiaceae | Apium graveolens | 1 | Ag8G00118 |
| Arecaceae | Cocos nucifera | 1 | scaffold015135G000090 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713721 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.272.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G04476 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G54130.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010608m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g08260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g065640.2N, BniB08g068420.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1058 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1084 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g01170 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0184s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate11g00250 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5524 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1079 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002793 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09981 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3890, BH02.3914, BH07.4221 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0040100, gene-QOZ80_1BG0090130 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0074170.1, HORVU.MOREX.r3.3HG0301790.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056419 |
| Poaceae | Oryza coarctata | 2 | Oco01G025080, Oco02G025980 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g63250.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G338600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300030, Pt_Chr0601511 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G004520, Chr03G020240, Chr05G028850, Chr0G012600 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G455000, Tel3E01G583200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG041590, gene_TRIDC3AG052720 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G279600.1, TraesCS1B02G288700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb147810_P002, Zm00001eb367490_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31634 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11551 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.867, evm.TU.LG23.146 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g00300 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1758, evm.TU.Scaffold_2_RagTag.659 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4532, nbisL1-mrna-5559 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1421, nbisL1-mrna-18006 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3742, nbisL1-mrna-9556 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.1038, evm.TU.utg000016l.664 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005652, Maker00017209 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12758, nbisL1-mrna-4989 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13718, nbisL1-mrna-16453 |
| Salicaceae | Populus euphratica | 2 | populus_peu11396, populus_peu25534 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606820 |
| Solanaceae | Solanum chilense | 1 | SOLCI000859900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031946 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.26827_chr04_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1789 |
| Zosteraceae | Zostera marina | 1 | Zosma01g23920.v3.1 |