Basic Information
Locus ID:
BniB08g068070.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Contains the following InterPro domains Zinc finger, PHD-type, conserved site (InterPro IPR019786), Zinc finger, PHD-type (InterPro IPR001965), Zinc finger, FYVE PHD-type (InterPro IPR011011), Acyl-CoA N-acyltransferase (InterPro IPR016181), Zinc finger, PHD-finger (InterPro IPR019787)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 62522815 | 62527098 | - | BniB08g068070.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 88,403.90 Da | 45.02 | 75.02 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 447 | 486 | 1.93285E-16 | - |
| Pfam | PF16135 | Tify domain binding domain | 176 | 231 | 1.1E-12 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 380 | 429 | 3.6E-13 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 447 | 487 | 1.6E-7 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 515 | 580 | 3.29E-7 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 676 | 769 | 3.8E-9 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 441 | 489 | 8.84E-15 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 440 | 506 | 3.5E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 522 | 582 | 3.4E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 622 | 789 | 1.8E-8 | - |
| SMART | SM00249 | PHD_3 | 523 | 580 | 1.4E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 446 | 487 | 3.4E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 521 | 582 | 8.5288 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 444 | 489 | 9.890499 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 447 | 486 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 524 | 579 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 49 | - | - |
| Coils | Coil | Coil | 30 | 50 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53680.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_018486253.1 | PREDICTED: uncharacterized protein LOC108856853 isoform X2 [Raphanus sativus] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WG04 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_000254 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology