Basic Information
Locus ID:
BniB08g068010.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 62500986 | 62506204 | - | BniB08g068010.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 104,443.00 Da | 37.24 | 93.80 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 616 | 881 | 2.6E-47 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 66 | 2.4E-7 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 269 | 327 | 6.1E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 148 | 208 | 9.3E-8 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 597 | 916 | 4.18E-75 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 42 | 393 | 3.74E-57 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 688 | 906 | 5.2E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 585 | 687 | 4.6E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 292 | 410 | 1.3E-11 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 188 | 291 | 2.0E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 187 | 1.5E-41 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 219 | 243 | 79.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 147 | 170 | 22.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 267 | 292 | 300.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 612 | 884 | 7.5E-39 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 314 | 338 | 22.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 195 | 218 | 230.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 612 | 884 | 38.929996 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 269 | 290 | 7.095899 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 618 | 640 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 732 | 744 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53590.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_018492227.1 | PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At3g53590 isoform X1 [Raphanus sativus] | 0 |
| Q9LFG1 | Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At3g53590 OS=Arabidopsis thaliana OX=3702 GN=At3g53590 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6J0P6F3 | putative leucine-rich repeat receptor-like serine/threonine-protein kinase At3g53590 isoform X2 OS=Raphanus sativus OX=3726 GN=LOC108862562 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology