halophFGD

Basic Information

Locus ID: BniB08g067670.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: Arginine and glutamate-rich 1

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B8	62347187	62347852	-	BniB08g067670.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.52	25,965.63 Da	54.89	87.65	-0.27

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	3	44	7.3E-6	IPR001810
SUPERFAMILY	SSF81383	F-box domain	3	71	4.97E-12	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	1	57	2.4E-5	-
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	92	186	3.6E-18	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K13173 (arginine and glutamate-rich protein 1)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G20030.1	F-box and associated interaction domains-containing protein.	0
RefSeq	XP_018465849.1	PREDICTED: putative F-box protein At1g32140 [Raphanus sativus]	0
Swiss-Prot	Q9LJZ8	Putative F-box protein At3g20030 OS=Arabidopsis thaliana OX=3702 GN=At3g20030 PE=4 SV=1	0
TrEMBL	A0A6J0M1A7	putative F-box protein At1g32140 OS=Raphanus sativus OX=3726 GN=LOC108837287 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	24	AT1G24800.1, AT1G24881.1, AT1G25055.1, AT1G25150.1 ... AT1G25211.1, AT1G32140.1, AT1G54550.1, AT1G59680.1, AT1G66490.1, AT1G67450.1, AT1G67455.1, AT2G33655.1, AT3G13680.1, AT3G13820.1, AT3G14030.1, AT3G19880.1, AT3G19890.1, AT3G20030.1, AT3G20400.1, AT3G49510.1, AT3G49520.1, AT4G05080.1, AT4G17200.1, AT5G60560.1
Brassicaceae	Eutrema salsugineum	15	Thhalv10000447m.g.v1.0, Thhalv10002786m.g.v1.0 ... Thhalv10003097m.g.v1.0, Thhalv10009753m.g.v1.0, Thhalv10009944m.g.v1.0, Thhalv10015452m.g.v1.0, Thhalv10019643m.g.v1.0, Thhalv10022026m.g.v1.0, Thhalv10022402m.g.v1.0, Thhalv10023084m.g.v1.0, Thhalv10023095m.g.v1.0, Thhalv10023820m.g.v1.0, Thhalv10023848m.g.v1.0, Thhalv10024142m.g.v1.0, Thhalv10027178m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g11150.v2.2, Sp3g32750.v2.2
Brassicaceae	Brassica nigra	13	BniB01g039260.2N, BniB02g015480.2N, BniB04g007550.2N ... BniB04g047270.2N, BniB05g002470.2N, BniB05g017590.2N, BniB06g018860.2N, BniB06g051530.2N, BniB07g030840.2N, BniB07g031550.2N, BniB07g055480.2N, BniB08g028340.2N, BniB08g067670.2N