Basic Information
Locus ID:
BniB08g067420.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 62218431 | 62220345 | + | BniB08g067420.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 55,678.33 Da | 43.89 | 76.20 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14136 | STKc_SRPK | 31 | 435 | 0.0 | - |
| Pfam | PF00069 | Protein kinase domain | 271 | 435 | 6.4E-21 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 42 | 182 | 4.8E-20 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 38 | 445 | 1.01E-83 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 96 | 435 | 7.2E-124 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 28 | 127 | 7.2E-124 | - |
| SMART | SM00220 | serkin_6 | 42 | 435 | 7.2E-57 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 42 | 435 | 32.103275 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 48 | 71 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 169 | 181 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 468 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53030.1 | ser/arg-rich protein kinase 4. Encodes a protein kinase SRPK4 that specifically targets Arabidopsis Ser/Arg-rich (SR) slicing factors involved in RNA metabolism. In vitro kinase assay showed that SRPK4 phosphorylates the SR protein RSp31. | 0 |
| RefSeq | XP_013605555.1 | PREDICTED: SRSF protein kinase 1-like [Brassica oleracea var. oleracea] | 0 |
| Q45FA5 | Serine/threonine-protein kinase SRPK OS=Physarum polycephalum OX=5791 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WH56 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_000315 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology