HalophFGD

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Basic Information
Locus ID: BniB08g067380.2N
Species & Taxonomic ID: Brassica nigra & 3710
Genome Assembly: N100
Description: Pyruvate kinase
Maps and Mapping Data
Chromosome Start End Strand ID
B8 62205119 62208308 + BniB08g067380.2N
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.62 57,517.62 Da 29.80 99.34 -0.02
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00224 Pyruvate kinase, barrel domain 30 375 1.3E-93 IPR015793
Pfam PF02887 Pyruvate kinase, alpha/beta domain 395 519 5.0E-24 IPR015795
SUPERFAMILY SSF52935 PK C-terminal domain-like 358 522 3.4E-23 IPR036918
SUPERFAMILY SSF50800 PK beta-barrel domain-like 96 186 1.05E-7 IPR011037
SUPERFAMILY SSF51621 Phosphoenolpyruvate/pyruvate domain 7 375 5.58E-76 IPR015813
Gene3D G3DSA:3.20.20.60 - 30 370 2.2E-150 IPR040442
Gene3D G3DSA:2.40.33.10 - 96 202 2.2E-150 IPR015806
Gene3D G3DSA:3.40.1380.20 - 371 513 2.2E-150 IPR036918
TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 30 516 2.2E-110 IPR001697
PRINTS PR01050 Pyruvate kinase family signature 280 304 1.1E-43 IPR001697
PRINTS PR01050 Pyruvate kinase family signature 253 279 1.1E-43 IPR001697
PRINTS PR01050 Pyruvate kinase family signature 221 235 1.1E-43 IPR001697
PRINTS PR01050 Pyruvate kinase family signature 85 101 1.1E-43 IPR001697
PRINTS PR01050 Pyruvate kinase family signature 329 347 1.1E-43 IPR001697
PRINTS PR01050 Pyruvate kinase family signature 348 364 1.1E-43 IPR001697
Gene Ontology
Biological Process:
GO:0006096 (glycolytic process)
Molecular Function:
GO:0000287 (magnesium ion binding) GO:0003824 (catalytic activity) GO:0004743 (pyruvate kinase activity) GO:0030955 (potassium ion binding)
KEGG Pathway
KO Term:
K00873 (pyruvate kinase [EC:2.7.1.40])
Pathway:
ko00010 (Glycolysis / Gluconeogenesis) map00010 (Glycolysis / Gluconeogenesis) ko00230 (Purine metabolism) map00230 (Purine metabolism) ko00620 (Pyruvate metabolism) map00620 (Pyruvate metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)
Module:
M00001 (Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate) M00002 (Glycolysis, core module involving three-carbon compounds) M00049 (Adenine ribonucleotide biosynthesis, IMP => ADP,ATP) M00050 (Guanine ribonucleotide biosynthesis, IMP => GDP,GTP)
Reaction:
R00200 (ATP + Pyruvate <=> ADP + Phosphoenolpyruvate) R00430 (GTP + Pyruvate <=> GDP + Phosphoenolpyruvate) R01138 (dATP + Pyruvate <=> dADP + Phosphoenolpyruvate) R01858 (dGTP + Pyruvate <=> dGDP + Phosphoenolpyruvate) R02320 (Nucleoside triphosphate + Pyruvate <=> NDP + Phosphoenolpyruvate)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G52990.1 Pyruvate kinase family protein. 0
RefSeq XP_013663105.1 pyruvate kinase 1, cytosolic [Brassica napus] 0
Swiss-Prot B8BJ39 Pyruvate kinase 1, cytosolic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_35105 PE=3 SV=1 0
TrEMBL A0A8X8B8U0 Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_000319 PE=4 SV=1 0
Expression
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BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 6 jg14503, jg14504, jg15028, jg31985, jg32659, jg3550
Aizoaceae Mesembryanthemum crystallinum 2 gene_14392, gene_4596
Amaranthaceae Atriplex hortensis 3 Ah007026, Ah022120, Ah030809
Amaranthaceae Beta vulgaris 2 BVRB_3g062650, BVRB_7g160680
Amaranthaceae Salicornia bigelovii 5 Sbi_jg27491, Sbi_jg33228, Sbi_jg35918, Sbi_jg59711 ...
Sbi_jg63766
Amaranthaceae Salicornia europaea 2 Seu_jg24163, Seu_jg7943
Amaranthaceae Suaeda aralocaspica 3 GOSA_00005650, GOSA_00013019, GOSA_00024114
Amaranthaceae Suaeda glauca 5 Sgl02246, Sgl21440, Sgl68668, Sgl71366, Sgl74959
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000000151, gene:ENSEOMG00000029320 ...
gene:ENSEOMG00000036612, gene:ENSEOMG00000039646, gene:ENSEOMG00000043750, gene:ENSEOMG00000043781
Amaranthaceae Chenopodium quinoa 5 CQ.Regalona.r1.3AG0022640, CQ.Regalona.r1.3BG0023370 ...
CQ.Regalona.r1.4AG0015520, CQ.Regalona.r1.7AG0019400, CQ.Regalona.r1.7BG0022000
Anacardiaceae Pistacia vera 3 pistato.v30170160, pistato.v30274520, pistato.v30295450
Apiaceae Apium graveolens 3 Ag11G04553, Ag2G02950, Ag3G02621
Arecaceae Cocos nucifera 3 COCNU_03G001910, scaffold004526G000010 ...
scaffold007042G000010
Arecaceae Phoenix dactylifera 3 gene-LOC103696956, gene-LOC103697737, gene-LOC103704838
Asparagaceae Asparagus officinalis 2 AsparagusV1_02.882.V1.1, AsparagusV1_09.271.V1.1
Asteraceae Flaveria trinervia 5 Ftri11G31230, Ftri12G08362, Ftri18G02215, Ftri6G04778 ...
Ftri9G22291
Brassicaceae Arabidopsis thaliana 2 AT2G36580.1, AT3G52990.1
Brassicaceae Eutrema salsugineum 2 Thhalv10010288m.g.v1.0, Thhalv10016506m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp4g18870.v2.2, Sp5g09330.v2.2
Brassicaceae Brassica nigra 3 BniB06g058090.2N, BniB06g066250.2N, BniB08g067380.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq02G1515, Ceq05G1171
Casuarinaceae Casuarina glauca 3 Cgl02G1570, Cgl05G1182, Cgl05G1184
Cymodoceaceae Cymodocea nodosa 3 gene.Cymno04g01240, gene.Cymno07g10330, gene.Cymno08g03420
Dunaliellaceae Dunaliella salina 3 Dusal.0164s00012.v1.0, Dusal.0444s00010.v1.0 ...
Dusal.1013s00004.v1.0
Hydrocharitaceae Thalassia testudinum 3 gene.Thate06g11500, gene.Thate06g11840, gene.Thate08g08560
Malvaceae Hibiscus hamabo Siebold & Zucc. 1 nbisL1-mrna-8580
Nitrariaceae Nitraria sibirica 2 evm.TU.LG01.2155, evm.TU.LG02.1190
Plantaginaceae Plantago ovata 3 Pov_00004952, Pov_00006274, Pov_00040226
Plumbaginaceae Limonium bicolor 4 Lb2G09778, Lb3G16095, Lb3G19161, Lb3G19295
Poaceae Echinochloa crus-galli 8 AH04.273, AH04.990, AH05.182, BH04.260, BH04.939, BH05.210 ...
CH04.1084, CH05.267
Poaceae Eleusine coracana subsp. coracana 6 gene-QOZ80_5AG0381270, gene-QOZ80_5BG0428320 ...
gene-QOZ80_9AG0674470, gene-QOZ80_9AG0678490, gene-QOZ80_9BG0698280, gene-QOZ80_9BG0702120
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.4HG0345500.1, HORVU.MOREX.r3.5HG0459370.1
Poaceae Lolium multiflorum 3 gene-QYE76_003144, gene-QYE76_064297, gene-QYE76_064309
Poaceae Oryza coarctata 6 Oco21G001040, Oco21G003200, Oco22G001870, Oco22G004000 ...
Oco23G001670, Oco24G001210
Poaceae Oryza sativa 3 LOC_Os11g05110.1, LOC_Os11g10980.1, LOC_Os12g05110.1
Poaceae Paspalum vaginatum 3 gene-BS78_05G046700, gene-BS78_08G022200 ...
gene-BS78_10G045000
Poaceae Puccinellia tenuiflora 4 Pt_Chr0103974, Pt_Chr0703114, Pt_Chr0703153, Pt_Chr0704216
Poaceae Sporobolus alterniflorus 8 Chr04G022040, Chr06G023760, Chr07G021430, Chr17G010520 ...
Chr19G012030, Chr27G003930, Chr31G000890, Chr31G003340
Poaceae Thinopyrum elongatum 2 Tel3E01G781500, Tel5E01G237000
Poaceae Triticum dicoccoides 5 gene_TRIDC1BG017820, gene_TRIDC4AG032330 ...
gene_TRIDC4BG016570, gene_TRIDC5AG022750, gene_TRIDC5BG023180
Poaceae Triticum aestivum 6 TraesCS4A02G203300.1, TraesCS4B02G107200.4 ...
TraesCS4D02G104100.1, TraesCS5A02G131100.1, TraesCS5B02G131000.1, TraesCS5D02G138800.1
Poaceae Zea mays 3 Zm00001eb168480_P001, Zm00001eb196650_P001 ...
Zm00001eb406450_P001
Poaceae Zoysia japonica 3 nbis-gene-25666, nbis-gene-40164, nbis-gene-46368
Poaceae Zoysia macrostachya 4 Zma_g17558, Zma_g17777, Zma_g24725, Zma_g25493
Portulacaceae Portulaca oleracea 8 evm.TU.LG03.2283, evm.TU.LG07.405, evm.TU.LG08.1498 ...
evm.TU.LG15.535, evm.TU.LG16.1163, evm.TU.LG17.1331, evm.TU.LG20.1379, evm.TU.LG22.390
Posidoniaceae Posidonia oceanica 2 gene.Posoc05g15490, gene.Posoc05g23180
Rhizophoraceae Bruguiera sexangula 3 evm.TU.Scaffold_10_RagTag.1142, evm.TU.Scaffold_2_RagTag.954 ...
evm.TU.Scaffold_1_RagTag.1472
Rhizophoraceae Carallia pectinifolia 3 nbisL1-mrna-13437, nbisL1-mrna-4253, nbisL1-mrna-6124
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-1040, nbisL1-mrna-4535
Rhizophoraceae Ceriops zippeliana 3 nbisL1-mrna-21782, nbisL1-mrna-3984, nbisL1-mrna-3987
Rhizophoraceae Kandelia candel 3 evm.TU.utg000004l.323, evm.TU.utg000009l.927 ...
evm.TU.utg000016l.488
Rhizophoraceae Kandelia obovata 3 Maker00003873, Maker00006164, Maker00016410
Rhizophoraceae Rhizophora apiculata 3 nbisL1-mrna-12584, nbisL1-mrna-16312, nbisL1-mrna-7662
Rhizophoraceae Rhizophora mangle 3 nbisL1-mrna-21418, nbisL1-mrna-415, nbisL1-mrna-5785
Salicaceae Populus euphratica 3 populus_peu06154, populus_peu11596, populus_peu20012
Solanaceae Lycium barbarum 2 gene-LOC132607154, gene-LOC132629927
Solanaceae Solanum chilense 2 SOLCI000086100, SOLCI003915600
Solanaceae Solanum pennellii 3 gene-LOC107002489, gene-LOC107004573, gene-LOC107029266
Tamaricaceae Reaumuria soongarica 4 STRG.1047_chr01_+, STRG.21195_chr08_-, STRG.27523_chr04_- ...
STRG.32234_chr09_-
Tamaricaceae Tamarix chinensis 4 TC00000028, TC02G1398, TC02G2553, TC12G1933
Zosteraceae Zostera marina 4 Zosma02g00810.v3.1, Zosma02g04450.v3.1, Zosma04g16420.v3.1 ...
Zosma05g03520.v3.1
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