Basic Information
Locus ID:
BniB08g066240.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 61502418 | 61503799 | - | BniB08g066240.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 38,634.37 Da | 40.14 | 91.82 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 7 | 41 | 1.7E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 54 | 7.59E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 37 | 7.8E-6 | - |
| SMART | SM00256 | fbox_2 | 1 | 41 | 8.5E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 102 | 299 | 1.9E-16 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 41 | 8.83511 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62380.1 | 0 | |
| RefSeq | XP_018478132.1 | PREDICTED: LOW QUALITY PROTEIN: putative F-box protein At1g71320 [Raphanus sativus] | 0 |
| Q9FVV8 | Putative F-box protein At1g71320 OS=Arabidopsis thaliana OX=3702 GN=At1g71320 PE=4 SV=1 | 0 | |
| TrEMBL | A0A397Y2S6 | FBA_1 domain-containing protein OS=Brassica campestris OX=3711 GN=BRARA_I04104 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G33530.1, AT1G71320.1, AT3G62350.1, AT3G62380.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10009802m.g.v1.0, Thhalv10009811m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp1g28940.v2.2, Sp1g29020.v2.2, Sp1g33930.v2.2 ... |
| Brassicaceae | Brassica nigra | 2 | BniB05g024070.2N, BniB08g066240.2N |