Basic Information
Locus ID:
BniB08g065950.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
CPK13
Description:
ATP binding calcium ion binding calmodulin-dependent protein kinase kinase protein kinase protein serine threonine kinase protein tyrosine kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 61265332 | 61268180 | + | BniB08g065950.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 59,335.20 Da | 40.36 | 85.68 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 53 | 311 | 9.88618E-133 | - |
| CDD | cd00051 | EFh | 431 | 493 | 3.81058E-18 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 358 | 418 | 3.8E-9 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 430 | 493 | 6.3E-14 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 56 | 312 | 5.2E-73 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 38 | 338 | 1.09E-82 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 336 | 505 | 2.57E-43 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 321 | 496 | 6.6E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 55 | 139 | 2.1E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 140 | 320 | 2.0E-60 | - |
| SMART | SM00054 | efh_1 | 359 | 387 | 3.7E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 395 | 423 | 5.5 | IPR002048 |
| SMART | SM00054 | efh_1 | 431 | 459 | 3.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 467 | 495 | 2.7E-6 | IPR002048 |
| SMART | SM00220 | serkin_6 | 54 | 312 | 1.1E-93 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 54 | 312 | 46.081799 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 355 | 390 | 16.103443 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 463 | 498 | 14.234451 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 427 | 462 | 14.987627 | IPR002048 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 60 | 83 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 174 | 186 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 368 | 380 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 476 | 488 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 34 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_013605595.1 | PREDICTED: calcium-dependent protein kinase 13-like [Brassica oleracea var. oleracea] | 0 |
| Q8W4I7 | Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana OX=3702 GN=CPK13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7WGR8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_000411 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology