Basic Information
Locus ID:
BniB08g064620.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box LRR-repeat kelch-repeat protein At1g11620
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 60570001 | 60573601 | - | BniB08g064620.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 54,448.00 Da | 44.15 | 99.70 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 4 | 45 | 1.0E-6 | IPR001810 |
| Pfam | PF07734 | F-box associated | 205 | 346 | 2.6E-21 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 67 | 1.44E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 53 | 4.1E-6 | - |
| SMART | SM00256 | fbox_2 | 5 | 45 | 1.9E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 108 | 324 | 5.7E-34 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 45 | 10.080346 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11620.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_048596981.1 | putative F-box/LRR-repeat/kelch-repeat protein At1g11620 [Brassica napus] | 0 |
| Q9SAB5 | Putative F-box/LRR-repeat/kelch-repeat protein At1g11620 OS=Arabidopsis thaliana OX=3702 GN=At1g11620 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X7WGN2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_000584 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G31510.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000539m.g.v1.0, Thhalv10011016m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 5 | BniB02g006350.2N, BniB08g012450.2N, BniB08g064620.2N ... |