Basic Information
Locus ID:
BniB08g062360.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 58844802 | 58845814 | + | BniB08g062360.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 34,784.33 Da | 40.37 | 87.08 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06606 | STKc_MAPKKK | 60 | 306 | 1.60381E-94 | - |
| Pfam | PF00069 | Protein kinase domain | 63 | 306 | 1.4E-47 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 66 | 306 | 5.88E-57 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 55 | 308 | 2.8E-55 | - |
| SMART | SM00220 | serkin_6 | 24 | 306 | 1.4E-45 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 26 | 306 | 33.813488 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 158 | 170 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45670.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_013746279.2 | mitogen-activated protein kinase kinase kinase 17-like [Brassica napus] | 0 |
| Q9SND6 | Mitogen-activated protein kinase kinase kinase 20 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WH70 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_000751 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT2G18530.1, AT3G45670.1, AT3G45790.1, AT3G46140.1 ... |
| Brassicaceae | Eutrema salsugineum | 12 | Thhalv10002766m.g.v1.0, Thhalv10002826m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 8 | Sp5g15460.v2.2, Sp5g15480.v2.2, Sp5g15720.v2.2 ... |
| Brassicaceae | Brassica nigra | 4 | BniB08g058970.2N, BniB08g059000.2N, BniB08g062340.2N ... |