Basic Information
Locus ID:
BniB08g061500.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
histone deacetylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 58248310 | 58249124 | - | BniB08g061500.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 18,077.35 Da | 39.31 | 92.04 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 76 | 143 | 2.4E-8 | IPR023801 |
| Pfam | PF00850 | Histone deacetylase domain | 1 | 65 | 1.8E-16 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 2 | 158 | 9.59E-40 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 77 | 161 | 8.7E-20 | IPR037138 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 1 | 76 | 1.5E-23 | IPR037138 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 31 | 46 | 3.0E-6 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 82 | 92 | 3.0E-6 | IPR000286 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35600.1 | histone deacetylase7. | 0 |
| RefSeq | XP_018438369.1 | PREDICTED: histone deacetylase 7-like [Raphanus sativus] | 0 |
| Q9FH09 | Histone deacetylase 7 OS=Arabidopsis thaliana OX=3702 GN=HDA7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B978 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_000829 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology