Basic Information
Locus ID:
BniB08g061490.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
histone deacetylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 58239560 | 58241383 | - | BniB08g061490.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 45,890.27 Da | 40.17 | 81.23 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 21 | 325 | 3.45836E-153 | - |
| Pfam | PF00850 | Histone deacetylase domain | 39 | 323 | 1.9E-55 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 37 | 377 | 2.25E-80 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 7 | 391 | 4.0E-96 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 2 | 407 | 4.6E-139 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 32 | 49 | 1.6E-30 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 125 | 145 | 1.6E-30 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 240 | 258 | 1.6E-30 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 166 | 182 | 1.6E-30 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 147 | 170 | 2.5E-13 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 262 | 272 | 2.5E-13 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 179 | 194 | 2.5E-13 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 223 | 236 | 1.6E-30 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 104 | 121 | 1.6E-30 | IPR003084 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35600.1 | histone deacetylase7. | 0 |
| RefSeq | XP_013737740.2 | histone deacetylase 7 [Brassica napus] | 0 |
| Q9FH09 | Histone deacetylase 7 OS=Arabidopsis thaliana OX=3702 GN=HDA7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WK96 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_000833 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology