Basic Information
Locus ID:
BniB08g059690.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
mitochondrial transcription termination factor family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 56634124 | 56635461 | + | BniB08g059690.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.52 | 50,866.05 Da | 45.00 | 96.02 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 84 | 421 | 9.5E-120 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 211 | 430 | 4.4E-51 | IPR038538 |
| SMART | SM00733 | mt_12 | 266 | 296 | 7.5E-5 | IPR003690 |
| SMART | SM00733 | mt_12 | 301 | 331 | 0.017 | IPR003690 |
| SMART | SM00733 | mt_12 | 98 | 129 | 0.014 | IPR003690 |
| SMART | SM00733 | mt_12 | 231 | 261 | 1.2 | IPR003690 |
| SMART | SM00733 | mt_12 | 336 | 367 | 1.5E-6 | IPR003690 |
| SMART | SM00733 | mt_12 | 134 | 165 | 38.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 368 | 402 | 0.61 | IPR003690 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46950.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_013647831.2 | transcription termination factor MTERF15, mitochondrial-like [Brassica napus] | 0 |
| TrEMBL | A0A816IL45 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C03P71120.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 13 | AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 14 | Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... |