Basic Information
Locus ID:
BniB08g059300.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 56268342 | 56269472 | - | BniB08g059300.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 41,153.58 Da | 69.13 | 67.45 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16669 | RING-H2_RNF181 | 199 | 243 | 1.12387E-20 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 259 | 374 | 1.4E-37 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 198 | 240 | 3.5E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 20 | 58 | 2.9E-14 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 179 | 246 | 3.98E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 166 | 246 | 3.4E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 199 | 239 | 2.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 199 | 240 | 12.164712 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46620.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_018433032.1 | PREDICTED: E3 ubiquitin-protein ligase RDUF1 [Raphanus sativus] | 0 |
| Q9SNB6 | E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WGK8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_001001 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology