Basic Information
Locus ID:
BniB08g059170.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 56177455 | 56179895 | - | BniB08g059170.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 71,143.08 Da | 34.90 | 95.78 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 256 | 298 | 7.35559E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 462 | 500 | 8.3E-7 | IPR000225 |
| Pfam | PF04564 | U-box domain | 252 | 322 | 4.0E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 379 | 418 | 4.5E-9 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 351 | 626 | 4.68E-49 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 246 | 329 | 2.52E-31 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 252 | 325 | 4.1E-31 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 489 | 642 | 1.7E-20 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 333 | 488 | 4.6E-36 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 8 | 118 | 9.0E-10 | IPR036537 |
| SMART | SM00185 | arm_5 | 461 | 501 | 0.8 | IPR000225 |
| SMART | SM00185 | arm_5 | 543 | 583 | 19.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 255 | 318 | 3.6E-36 | IPR003613 |
| SMART | SM00185 | arm_5 | 502 | 542 | 10.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 379 | 419 | 4.7E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 420 | 460 | 0.064 | IPR000225 |
| SMART | SM00185 | arm_5 | 585 | 625 | 96.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 513 | 550 | 8.837399 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 251 | 325 | 44.920231 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 390 | 432 | 13.1774 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 624 | 657 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 624 | 647 | - | - |
| Coils | Coil | Coil | 616 | 636 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_013629415.1 | PREDICTED: U-box domain-containing protein 13 [Brassica oleracea var. oleracea] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8BDE4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_001012 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology