Basic Information
Locus ID:
BniB08g057890.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
vacuolar proton-transporting V-type ATPase complex assembly
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 54453659 | 54454228 | - | BniB08g057890.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 21,740.26 Da | 53.06 | 81.53 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 142 | 185 | 2.3E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 135 | 187 | 6.31E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 188 | 4.5E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 144 | 184 | 3.9E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 144 | 185 | 12.622055 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_048613374.1 | uncharacterized protein LOC125587211 [Brassica napus] | 0 |
| TrEMBL | A0A8X7W6R6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_007732 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002215m.g.v1.0 |
| Brassicaceae | Brassica nigra | 24 | BniB01g016270.2N, BniB01g039860.2N, BniB01g039880.2N ... |