Basic Information
Locus ID:
BniB08g053840.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Contains the following InterPro domains Protein kinase, catalytic domain (InterPro IPR000719), Serine-threonine tyrosine-protein kinase (InterPro IPR001245), Serine threonine protein kinase-like, ATMRK (InterPro IPR015783), Protein kinase-like domain (InterPro IPR011009), Serine threonine-protein kinase, active site (InterPro IPR008271)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 38779823 | 38781052 | + | BniB08g053840.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 15,285.58 Da | 48.57 | 91.02 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 51 | 127 | 1.1E-15 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 51 | 129 | 4.45E-20 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 47 | 133 | 1.5E-19 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 137 | 13.969353 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22750.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_013583754.1 | PREDICTED: serine/threonine-protein kinase HT1-like [Brassica oleracea var. oleracea] | 0 |
| Q55EC7 | RasGEF domain-containing serine/threonine-protein kinase X OS=Dictyostelium discoideum OX=44689 GN=gefX PE=2 SV=1 | 0 | |
| TrEMBL | A0A178VJ26 | Protein kinase domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At3g24500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah013551 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0005450, CQ.Regalona.r1.6BG0005700 |
| Brassicaceae | Brassica nigra | 1 | BniB08g053840.2N |