Basic Information
Locus ID:
BniB08g052090.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 35510977 | 35515116 | + | BniB08g052090.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 103,125.06 Da | 46.25 | 82.69 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 746 | 899 | 5.90244E-59 | - |
| Pfam | PF06337 | DUSP domain | 50 | 142 | 6.0E-24 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 311 | 898 | 5.0E-86 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 308 | 901 | 1.57E-112 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 25 | 142 | 3.4E-28 | IPR035927 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 301 | 507 | 3.3E-68 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 18 | 155 | 5.3E-36 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 718 | 909 | 7.1E-60 | - |
| SMART | SM00695 | dusp | 45 | 144 | 2.5E-39 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 26 | 141 | 19.513391 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 310 | 901 | 59.487083 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 843 | 860 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 311 | 326 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10570.1 | ubiquitin-specific protease 9. encodes a ubiquitin-specific protease family member, UBP9. | 0 |
| RefSeq | XP_018452390.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like [Raphanus sativus] | 0 |
| Q9ZSB5 | Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X8BCS8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_001490 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology