Basic Information
Locus ID:
BniB08g051620.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the FBPase class 1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 35067202 | 35068750 | - | BniB08g051620.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 55,325.24 Da | 52.27 | 75.32 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 434 | 468 | 2.89078E-10 | - |
| Pfam | PF13650 | Aspartyl protease | 435 | 482 | 3.9E-7 | - |
| SUPERFAMILY | SSF50630 | Acid proteases | 427 | 482 | 7.16E-6 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 420 | 488 | 2.5E-11 | IPR021109 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 445 | 456 | - | IPR001969 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 349 | - | - |
| Coils | Coil | Coil | 12 | 32 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko00010 (Glycolysis / Gluconeogenesis)
map00010 (Glycolysis / Gluconeogenesis)
ko00030 (Pentose phosphate pathway)
map00030 (Pentose phosphate pathway)
ko00051 (Fructose and mannose metabolism)
map00051 (Fructose and mannose metabolism)
ko00680 (Methane metabolism)
map00680 (Methane metabolism)
ko00710 (Carbon fixation by Calvin cycle)
map00710 (Carbon fixation by Calvin cycle)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048627868.1 | uncharacterized protein LOC125596911 [Brassica napus] | 0 |
| TrEMBL | A0A6D2KNH5 | Retrotrans_gag domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS40738 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology