Basic Information
Locus ID:
BniB08g051300.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
protein polyubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 34691426 | 34692095 | - | BniB08g051300.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 23,995.68 Da | 57.11 | 99.24 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 150 | 197 | 3.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 149 | 202 | 8.94E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 208 | 9.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 150 | 196 | 5.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 150 | 197 | 12.135206 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05350.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013619890.1 | PREDICTED: uncharacterized protein LOC106326461 [Brassica oleracea var. oleracea] | 0 |
| Q08109 | ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HRD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B9V5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_001564 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT4G05350.1, AT4G12140.1, AT4G12150.1, AT4G12190.1 ... |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10029142m.g.v1.0, Thhalv10029147m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06770.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g058300.2N, BniB08g037110.2N, BniB08g051300.2N ... |