Basic Information
Locus ID:
BniB08g050940.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
spa1-related 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 34234900 | 34239172 | - | BniB08g050940.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 111,429.49 Da | 56.52 | 77.64 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 688 | 1004 | 1.32314E-39 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 868 | 900 | 0.021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 778 | 816 | 0.003 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 691 | 1006 | 5.65E-52 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 277 | 529 | 5.5E-19 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 276 | 528 | 7.5E-27 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 667 | 1008 | 1.7E-123 | IPR015943 |
| SMART | SM00320 | WD40_4 | 966 | 1006 | 3.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 733 | 773 | 0.92 | IPR001680 |
| SMART | SM00320 | WD40_4 | 862 | 900 | 5.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 684 | 723 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 819 | 858 | 0.033 | IPR001680 |
| SMART | SM00320 | WD40_4 | 776 | 816 | 2.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 911 | 950 | 11.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 169 | 522 | 0.002 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 783 | 818 | 8.518333 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 869 | 902 | 10.284687 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 740 | 782 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 869 | 902 | 12.346452 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 169 | 522 | 12.329808 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 783 | 825 | 10.942887 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 760 | 774 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 887 | 901 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 803 | 817 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 803 | 817 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 887 | 901 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 760 | 774 | 1.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 49 | - | - |
| Coils | Coil | Coil | 562 | 582 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_013611717.1 | PREDICTED: protein SPA1-RELATED 2 [Brassica oleracea var. oleracea] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7WJC2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_001587 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology