Basic Information
Locus ID:
BniB08g050590.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
glycerophosphodiester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 33768428 | 33774480 | - | BniB08g050590.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 82,373.42 Da | 36.43 | 89.65 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 37 | 335 | 3.59916E-174 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 352 | 653 | 1.92589E-173 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 358 | 648 | 2.8E-24 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 44 | 330 | 1.7E-5 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 36 | 333 | 2.28E-42 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 352 | 653 | 3.14E-42 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 352 | 654 | 3.9E-43 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 35 | 336 | 2.0E-37 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 37 | 336 | 41.621262 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 352 | 654 | 46.712563 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 731 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 707 | 731 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_018452060.1 | PREDICTED: glycerophosphodiester phosphodiesterase GDPDL3-like isoform X1 [Raphanus sativus] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A8X7WHR4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_001616 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology