Basic Information
Locus ID:
BniB08g050400.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
UV radiation resistance-associated gene
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 33550604 | 33551594 | + | BniB08g050400.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.54 | 19,448.01 Da | 61.76 | 73.51 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | Coil | Coil | 82 | 102 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32760.1 | 0 | |
| RefSeq | XP_024004288.1 | UV radiation resistance-associated gene protein isoform X3 [Eutrema salsugineum] | 0 |
| Q8S9J3 | Vacuolar protein sorting 38 OS=Arabidopsis thaliana OX=3702 GN=VPS38 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WGM1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_001629 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg11004 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19207 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah022538, Ah038659, Ah038660 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14454, Sbi_jg53723 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10331 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012659 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78206, Sgl80698 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000031461, gene:ENSEOMG00000043084 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0025550, CQ.Regalona.r1.3BG0026470 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30241920 |
| Apiaceae | Apium graveolens | 1 | Ag6G02957 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G005780 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704998 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1719.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G16569 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G32760.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016939m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g15100.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g020600.2N, BniB08g050400.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0720 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0768 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g02790 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0926s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g09840 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.443 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019461 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G15793, Lb3G15802, Lb3G16394 |
| Poaceae | Echinochloa crus-galli | 10 | AH04.181, AH05.3, AH05.4, AH07.5, BH04.162, BH05.106 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0368780, gene-QOZ80_5BG0427050 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0069830.1, HORVU.MOREX.r3.5HG0462990.1 |
| Poaceae | Oryza coarctata | 4 | Oco09G012800, Oco10G012880, Oco11G017250, Oco12G017470 |
| Poaceae | Oryza sativa | 2 | LOC_Os05g41160.1, LOC_Os06g50110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G011000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702947, Pt_Chr0703060 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr04G021440, Chr06G023060, Chr16G008830, Chr16G008840 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G496900, Tel1E01G681600, Tel5E01G248200 ... |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG045750, gene_TRIDC1BG051810 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G308000.2, TraesCS1B02G318700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb291290_P002, Zm00001eb405320_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-14298, nbis-gene-25720, nbis-gene-26994 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g18368, Zma_g24687, Zma_g26963 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG07.46 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g06560 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1386, evm.TU.Scaffold_6_RagTag.998 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-15675, nbisL1-mrna-1708 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11450 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-857 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.631 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007985 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15134 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4388 |
| Salicaceae | Populus euphratica | 1 | populus_peu24268 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609504, gene-LOC132635166 |
| Solanaceae | Solanum chilense | 1 | SOLCI002051200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029205 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11148 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1778 |
| Zosteraceae | Zostera marina | 1 | Zosma01g32870.v3.1 |