Basic Information
Locus ID:
BniB08g050010.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
glycerophosphodiester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 33061665 | 33064664 | - | BniB08g050010.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 84,886.88 Da | 39.31 | 93.55 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 372 | 679 | 1.34565E-150 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 43 | 355 | 1.12537E-155 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 378 | 675 | 1.8E-22 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 372 | 679 | 4.19E-38 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 42 | 352 | 1.18E-33 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 372 | 680 | 1.0E-36 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 42 | 355 | 2.3E-27 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 43 | 356 | 31.81218 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 372 | 680 | 38.754868 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_013745732.2 | glycerophosphodiester phosphodiesterase GDPDL4-like [Brassica napus] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WKL8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_001660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology