Basic Information
Locus ID:
BniB08g049570.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Agamous-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 32612891 | 32616717 | - | BniB08g049570.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 25,334.64 Da | 55.97 | 78.10 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 79 | 6.63355E-41 | IPR033896 |
| Pfam | PF01486 | K-box region | 83 | 171 | 1.0E-23 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 1.1E-26 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 74 | 6.67E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 84 | 3.6E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 4.9E-41 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.903179 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 87 | 177 | 14.647276 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 6.6E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 6.6E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 6.6E-31 | IPR002100 |
| Coils | Coil | Coil | 121 | 170 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11880.1 | AGAMOUS-like 14. AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots. | 0 |
| RefSeq | XP_009114655.1 | agamous-like MADS-box protein AGL14 [Brassica rapa] | 0 |
| Q38838 | Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana OX=3702 GN=AGL14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3P5Y0M7 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA09T38290Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology