Basic Information
Locus ID:
BniB08g049550.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
FIZZY-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 32589891 | 32592593 | + | BniB08g049550.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 52,403.41 Da | 47.06 | 76.95 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 284 | 320 | 6.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 414 | 450 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 326 | 365 | 0.03 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 170 | 458 | 5.62E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 146 | 455 | 7.6E-120 | IPR015943 |
| SMART | SM00320 | WD40_4 | 368 | 408 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 197 | 237 | 0.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 281 | 320 | 5.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 240 | 277 | 0.24 | IPR001680 |
| SMART | SM00320 | WD40_4 | 411 | 450 | 3.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 365 | 0.0024 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 418 | 451 | 11.65559 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 288 | 329 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 288 | 320 | 10.970139 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 418 | 451 | 14.084198 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 437 | 451 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11920.1 | cell cycle switch protein 52 A2. Encodes a putative activator of the anaphase-promoting complex/cyclosome. Promotes exit from the cell cycle and entry into the endocycle leading to endoreduplication. | 0 |
| RefSeq | XP_018452168.1 | PREDICTED: protein FIZZY-RELATED 1 isoform X1 [Raphanus sativus] | 0 |
| Q8VZS9 | Protein FIZZY-RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=FZR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WGJ5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_001693 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology