Basic Information
Locus ID:
BniB08g048440.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Component of the origin recognition complex (ORC) that binds origins of replication. It has a role in both chromosomal replication and mating type transcriptional silencing. Binds to the ARS consensus sequence (ACS) of origins of replication (By similarity). H3K4me3 effector that regulates positively the transcription of a subset of genes
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 31480810 | 31483230 | + | BniB08g048440.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.70 | 91,479.39 Da | 49.02 | 79.60 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 460 | 606 | 3.1E-20 | IPR003959 |
| Pfam | PF00628 | PHD-finger | 170 | 217 | 2.5E-10 | IPR019787 |
| Pfam | PF17872 | AAA lid domain | 633 | 667 | 5.1E-11 | IPR041083 |
| Pfam | PF01426 | BAH domain | 245 | 336 | 6.2E-10 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 156 | 222 | 3.1E-17 | IPR011011 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 426 | 672 | 1.64E-36 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 412 | 608 | 1.0E-62 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 609 | 696 | 1.1E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 162 | 236 | 9.2E-16 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 115 | 356 | 1.0E-27 | IPR043151 |
| SMART | SM00249 | PHD_3 | 169 | 216 | 2.0E-9 | IPR001965 |
| SMART | SM00382 | AAA_5 | 456 | 610 | 9.6E-6 | IPR003593 |
| SMART | SM00439 | BAH_4 | 145 | 339 | 9.4E-14 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 221 | 339 | 17.982555 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 167 | 218 | 9.9795 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 170 | 215 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 368 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 378 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12620.1 | origin of replication complex 1B. Origin Recognition Complex subunit 1b. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with ORC2 and ORC5. Highly expressed in proliferating cells. Expression levels are independent of light regime. | 0 |
| RefSeq | XP_009114605.1 | origin of replication complex subunit 1B [Brassica rapa] | 0 |
| Q9SU24 | Origin of replication complex subunit 1B OS=Arabidopsis thaliana OX=3702 GN=ORC1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WJM1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_001767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8564 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11642 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004979 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g072530 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17982, Sbi_jg61068, Sbi_jg61069, Sbi_jg62605 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1187, Seu_jg22822 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014432 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23864, Sgl25026, Sgl29035, Sgl30166 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000008680, gene:ENSEOMG00000009062 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0001390, CQ.Regalona.r1.4BG0001470 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30052930 |
| Apiaceae | Apium graveolens | 1 | Ag1G00759 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G004340 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715915 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2200.V1.1, AsparagusV1_08.1022.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G17122 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G12620.1, AT4G14700.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10029404m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g04850.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g048440.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1916 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G2392, Cgl05G1916 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g13690 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0095s00015.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g04590 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2419 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.246 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00014838, Pov_00017121 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14292 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.585, BH06.639, CH06.652 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0511740, gene-QOZ80_6BG0463650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0659760.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028144 |
| Poaceae | Oryza coarctata | 2 | Oco11G004080, Oco12G004090 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g08790.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G068600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0405206 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G021270, Chr14G002990, Chr21G002210 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G308600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG018650, gene_TRIDC7BG008130 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G151700.1, TraesCS7B02G055600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb278360_P002, Zm00001eb374440_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4979 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29247 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG22.636, evm.TU.LG25.643 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g11660 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.1053 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29966 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3547 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16417 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.637 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015880 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4537 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20746 |
| Salicaceae | Populus euphratica | 1 | populus_peu35886 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617372, gene-LOC132626529 |
| Solanaceae | Solanum chilense | 1 | SOLCI003341300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014942 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5542 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2090 |
| Zosteraceae | Zostera marina | 1 | Zosma04g08950.v3.1 |