Basic Information
Locus ID:
BniB08g048240.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 31306683 | 31309241 | - | BniB08g048240.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.79 | 13,803.82 Da | 50.35 | 79.27 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20830.2 | - | 0 |
| RefSeq | NP_001321244.1 | multiple chloroplast division site 1 [Arabidopsis thaliana] | 0 |
| Q8GWA7 | Protein MULTIPLE CHLOROPLAST DIVISION SITE 1 OS=Arabidopsis thaliana OX=3702 GN=MCD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7W2T1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_014421 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6030 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8327 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39801, Sbi_jg55146 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14542 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013072 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12415, Sgl17678 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018020, gene:ENSEOMG00000035932 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0023530, CQ.Regalona.r1.1BG0000710 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30048070 |
| Apiaceae | Apium graveolens | 1 | Ag11G03512 |
| Arecaceae | Cocos nucifera | 1 | scaffold005325G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704934 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G20451 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G20830.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007995m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g18530.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g028930.2N, BniB01g034750.2N, BniB03g008810.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1398 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1530 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g07360 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g17030 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1410 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.44 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023153 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12366 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2078, BH09.2232, CH09.2375 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4AG0306200 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0196150.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_045808 |
| Poaceae | Oryza coarctata | 2 | Oco07G014150, Oco08G013660 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g49540.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G199800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301608, Pt_Chr0306597 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G005520, Chr25G004630, Chr26G014010, Chr30G004480 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G773000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG065070, gene_TRIDC2BG069470 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G455800.1, TraesCS2B02G477800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb072780_P001, Zm00001eb428100_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5668 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21855 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.477, evm.TU.LG12.1239 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g27800, gene.Posoc06g15430 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.359 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18905 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7287 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6934 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.840 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010365 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8800 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20121 |
| Salicaceae | Populus euphratica | 2 | populus_peu15515, populus_peu33146 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636046 |
| Solanaceae | Solanum chilense | 1 | SOLCI006266600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029010 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15891 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1137 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23280.v3.1 |