Basic Information
Locus ID:
BniB08g047780.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 30615446 | 30627053 | - | BniB08g047780.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 121,549.32 Da | 48.39 | 91.06 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 112 | 368 | 9.68736E-89 | - |
| CDD | cd14066 | STKc_IRAK | 780 | 1037 | 3.54203E-90 | - |
| Pfam | PF00069 | Protein kinase domain | 776 | 975 | 9.4E-48 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 108 | 367 | 3.2E-48 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 599 | 676 | 1.0E-7 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 460 | 555 | 2.9E-13 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 756 | 1063 | 1.04E-80 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 89 | 401 | 5.26E-80 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 579 | 678 | 1.8E-13 | IPR038408 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 67 | 181 | 2.7E-37 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 741 | 849 | 2.9E-38 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 182 | 377 | 3.7E-56 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 850 | 1046 | 4.8E-57 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 450 | 557 | 1.0E-17 | IPR038408 |
| SMART | SM00220 | serkin_6 | 106 | 371 | 4.8E-37 | IPR000719 |
| SMART | SM00220 | serkin_6 | 774 | 1040 | 7.3E-38 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 449 | 558 | 15.456911 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 573 | 679 | 13.302511 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 774 | 1045 | 39.028934 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 106 | 376 | 38.760387 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 227 | 239 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 780 | 802 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 895 | 907 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 112 | 134 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04540.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 39. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_006396683.2 | uncharacterized protein LOC18014392 [Eutrema salsugineum] | 0 |
| Q9SYS7 | Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana OX=3702 GN=CRK39 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X7UM00 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_053716 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G04500.1, AT4G04540.1, AT4G04570.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10028430m.g.v1.0, Thhalv10028504m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g04360.v2.2, Sp6g04390.v2.2, SpUn0392_0010.v2.2 |
| Brassicaceae | Brassica nigra | 15 | BniB04g010550.2N, BniB05g056170.2N, BniB08g026560.2N ... |