Basic Information
Locus ID:
BniB08g046290.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 29157110 | 29157832 | - | BniB08g046290.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 26,889.52 Da | 43.68 | 71.33 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 45 | 93 | 1.17088E-26 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 47 | 91 | 9.1E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 42 | 104 | 3.33E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 141 | 3.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 47 | 91 | 5.9E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 47 | 92 | 13.521988 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 62 | 71 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03510.1 | RING membrane-anchor 1. RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity. | 0 |
| RefSeq | XP_009121796.1 | E3 ubiquitin-protein ligase RMA1 [Brassica rapa] | 0 |
| O64425 | E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WH81 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_001944 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology