Basic Information
Locus ID:
BniB08g045930.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
grr1-like protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 28888518 | 28891006 | - | BniB08g045930.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.14 | 66,463.44 Da | 46.26 | 95.13 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 62 | 108 | 1.2E-23 | IPR041101 |
| Pfam | PF18511 | F-box | 5 | 43 | 3.6E-14 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 35 | 6.41E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 29 | 530 | 2.59E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 42 | 571 | 3.6E-173 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 41 | 8.4E-15 | - |
| SMART | SM00367 | LRR_CC_2 | 476 | 500 | 36.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 367 | 391 | 1.9 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 125 | 150 | 130.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 427 | 450 | 49.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 284 | 308 | 340.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 5 | 46 | 6.2E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 100 | 124 | 640.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03190.1 | GRR1-like protein 1. Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression. | 0 |
| RefSeq | XP_048625540.1 | GRR1-like protein 1 [Brassica napus] | 0 |
| Q9ZR12 | GRR1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=GRH1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WHA3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_001974 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology