Basic Information
Locus ID:
BniB08g045680.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Leucine-rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 28751583 | 28752779 | + | BniB08g045680.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 43,599.64 Da | 37.75 | 102.16 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 125 | 184 | 2.1E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 69 | 2.4E-8 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 39 | 370 | 1.47E-43 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 194 | 6.1E-36 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 195 | 379 | 3.1E-26 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 147 | 171 | 1.5 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 240 | 264 | 84.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 306 | 329 | 120.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 149 | 171 | 7.403927 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 240 | 253 | 7.0E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 150 | 163 | 7.0E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03010.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_013606624.1 | PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL1 [Brassica oleracea var. oleracea] | 0 |
| TrEMBL | A0A3P6E5L5 | LRRNT_2 domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC9T53175H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology