Basic Information
Locus ID:
BniB08g045640.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
cellular macromolecule catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 28737840 | 28739135 | + | BniB08g045640.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 49,060.24 Da | 63.16 | 73.94 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 13 | 72 | 6.7956E-13 | - |
| Pfam | PF00240 | Ubiquitin family | 13 | 75 | 1.4E-13 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 5 | 88 | 2.7E-13 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 73 | 3.5E-13 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 72 | 12.465626 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03370.1 | Ubiquitin family protein. | 0 |
| RefSeq | XP_013607464.1 | PREDICTED: uncharacterized protein LOC106314063 [Brassica oleracea var. oleracea] | 0 |
| Q9ZT95 | Ubiquitin domain-containing protein 7SL RNA1 OS=Arabidopsis thaliana OX=3702 GN=7SL1 PE=3 SV=2 | 0 | |
| TrEMBL | A0A3P5XTM8 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA09T35878Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g045640.2N |