Basic Information
Locus ID:
BniB08g045630.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
cellular macromolecule catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 28734336 | 28736808 | + | BniB08g045630.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 53,621.40 Da | 50.81 | 75.53 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 71 | 139 | 8.33505E-14 | - |
| Pfam | PF00240 | Ubiquitin family | 71 | 141 | 4.4E-15 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 390 | 452 | 4.55E-5 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 42 | 142 | 3.33E-19 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 68 | 139 | 2.6E-16 | - |
| SMART | SM00213 | ubq_7 | 69 | 141 | 6.8E-12 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 69 | 145 | 13.184215 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 372 | 452 | 8.611381 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 279 | - | - |
| Coils | Coil | Coil | 394 | 418 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03370.1 | Ubiquitin family protein. | 0 |
| RefSeq | XP_018455531.1 | PREDICTED: uncharacterized protein LOC108826646 [Raphanus sativus] | 0 |
| Q9ZT95 | Ubiquitin domain-containing protein 7SL RNA1 OS=Arabidopsis thaliana OX=3702 GN=7SL1 PE=3 SV=2 | 0 | |
| TrEMBL | A0A8X7WKC9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_001995 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10029305m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03000.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB08g039200.2N, BniB08g039210.2N, BniB08g045630.2N |