Basic Information
Locus ID:
BniB08g045080.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
prostaglandin-E synthase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 28308240 | 28313539 | - | BniB08g045080.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 103,310.57 Da | 45.96 | 70.03 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06465 | p23_hB-ind1_like | 711 | 818 | 1.55771E-43 | - |
| Pfam | PF03107 | C1 domain | 121 | 164 | 3.1E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 544 | 590 | 2.1E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 63 | 108 | 1.1E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 243 | 284 | 2.3E-11 | IPR004146 |
| Pfam | PF03107 | C1 domain | 377 | 426 | 5.0E-9 | IPR004146 |
| Pfam | PF04969 | CS domain | 712 | 787 | 7.1E-7 | IPR007052 |
| Pfam | PF03107 | C1 domain | 182 | 230 | 5.3E-11 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 111 | 169 | 1.78E-9 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 235 | 298 | 2.44E-16 | - |
| SUPERFAMILY | SSF49764 | HSP20-like chaperones | 709 | 846 | 3.31E-29 | IPR008978 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 36 | 112 | 2.24E-16 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 320 | 438 | 1.08E-17 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 173 | 235 | 1.0E-10 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 512 | 593 | 9.94E-16 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 470 | 511 | 2.54E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 196 | 299 | 2.2E-5 | IPR013083 |
| Gene3D | G3DSA:2.60.40.790 | - | 708 | 829 | 1.2E-30 | IPR008978 |
| SMART | SM00109 | c1_12 | 296 | 347 | 1.3 | IPR002219 |
| SMART | SM00109 | c1_12 | 68 | 113 | 0.41 | IPR002219 |
| SMART | SM00109 | c1_12 | 380 | 431 | 3.5 | IPR002219 |
| SMART | SM00109 | c1_12 | 122 | 169 | 2.0 | IPR002219 |
| SMART | SM00109 | c1_12 | 244 | 290 | 0.63 | IPR002219 |
| ProSiteProfiles | PS51203 | CS domain profile. | 708 | 797 | 15.152733 | IPR007052 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 67 | 115 | 8.4464 | IPR002219 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 880 | 918 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 892 | 918 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01760.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_009111284.2 | uncharacterized protein LOC103836744 [Brassica rapa] | 0 |
| Q8L7U4 | Co-chaperone protein p23-1 OS=Arabidopsis thaliana OX=3702 GN=P23-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A816IJ81 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C09P01990.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg35663, jg8188, jg8412, jg8450, jg8451, jg8457 |
| Apiaceae | Apium graveolens | 5 | Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874 |
| Asteraceae | Flaveria trinervia | 12 | Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... |
| Brassicaceae | Arabidopsis thaliana | 35 | AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... |
| Brassicaceae | Eutrema salsugineum | 34 | Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... |
| Brassicaceae | Brassica nigra | 39 | BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 17 | Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... |
| Casuarinaceae | Casuarina glauca | 23 | Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 6 | nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17998 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17876 |
| Salicaceae | Populus euphratica | 4 | populus_peu26078, populus_peu26197, populus_peu26198 ... |