halophFGD

Basic Information

Locus ID: BniB08g044720.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: prostaglandin-E synthase activity

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B8	28093693	28095672	+	BniB08g044720.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.57	76,313.41 Da	44.80	74.17	-0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03107	C1 domain	63	108	1.5E-8	IPR004146
Pfam	PF03107	C1 domain	295	342	1.5E-6	IPR004146
Pfam	PF03107	C1 domain	543	590	3.0E-6	IPR004146
Pfam	PF03107	C1 domain	243	284	4.2E-10	IPR004146
Pfam	PF03107	C1 domain	377	426	5.9E-9	IPR004146
Pfam	PF03107	C1 domain	121	164	2.1E-7	IPR004146
Pfam	PF03107	C1 domain	182	230	3.2E-11	IPR004146
SUPERFAMILY	SSF57889	Cysteine-rich domain	513	597	3.24E-16	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	174	235	1.26E-10	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	36	110	1.21E-16	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	472	510	5.93E-5	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	319	438	2.5E-17	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	111	168	9.52E-10	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	236	298	1.03E-16	-
SMART	SM00109	c1_12	122	169	2.0	IPR002219
SMART	SM00109	c1_12	68	107	2.9	IPR002219
SMART	SM00109	c1_12	296	347	0.31	IPR002219
SMART	SM00109	c1_12	244	290	0.8	IPR002219
SMART	SM00109	c1_12	380	431	0.77	IPR002219
ProSiteProfiles	PS50081	Zinc finger phorbol-ester/DAG-type profile.	67	115	8.5628	IPR002219

Gene Ontology

Biological Process:

GO:0035556 (intracellular signal transduction)

KEGG Pathway

KO Term:

K10858 (DNA mismatch repair protein PMS2)

Pathway:

ko03430 (Mismatch repair) map03430 (Mismatch repair) ko03460 (Fanconi anemia pathway) map03460 (Fanconi anemia pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G01760.1	Cysteine/Histidine-rich C1 domain family protein.
RefSeq	XP_009111284.2	uncharacterized protein LOC103836744 [Brassica rapa]
TrEMBL	A0A8X7WKH3	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_002070 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg35663, jg8188, jg8412, jg8450, jg8451, jg8457
Apiaceae	Apium graveolens	5	Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874
Asteraceae	Flaveria trinervia	12	Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... Ftri1G15699, Ftri1G31999, Ftri3G08687, Ftri3G10138, Ftri6G30596, Ftri8G05177, Ftri8G13431, Ftri8G27137
Brassicaceae	Arabidopsis thaliana	35	AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... AT2G43220.1, AT3G06990.1, AT3G07000.1, AT3G45840.1, AT3G46800.1, AT3G46810.1, AT3G48400.1, AT4G01350.1, AT4G01740.1, AT4G01760.1, AT4G01910.1, AT4G01920.1, AT4G01925.1, AT4G01930.1, AT4G02180.1, AT4G02190.1, AT4G09690.1, AT4G11390.1, AT4G11540.1, AT4G11550.1, AT4G13992.1, AT4G16015.1, AT5G16430.1, AT5G22355.1, AT5G26190.1, AT5G37620.1, AT5G40320.1, AT5G45730.1, AT5G59920.1, AT5G59930.1, AT5G59940.1
Brassicaceae	Eutrema salsugineum	34	Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... Thhalv10002432m.g.v1.0, Thhalv10003740m.g.v1.0, Thhalv10003743m.g.v1.0, Thhalv10003754m.g.v1.0, Thhalv10003760m.g.v1.0, Thhalv10003761m.g.v1.0, Thhalv10005293m.g.v1.0, Thhalv10005296m.g.v1.0, Thhalv10005411m.g.v1.0, Thhalv10007210m.g.v1.0, Thhalv10009528m.g.v1.0, Thhalv10009889m.g.v1.0, Thhalv10012095m.g.v1.0, Thhalv10012175m.g.v1.0, Thhalv10012196m.g.v1.0, Thhalv10012912m.g.v1.0, Thhalv10012915m.g.v1.0, Thhalv10016311m.g.v1.0, Thhalv10022573m.g.v1.0, Thhalv10023179m.g.v1.0, Thhalv10024646m.g.v1.0, Thhalv10027008m.g.v1.0, Thhalv10027103m.g.v1.0, Thhalv10027671m.g.v1.0, Thhalv10028079m.g.v1.0, Thhalv10028133m.g.v1.0, Thhalv10028236m.g.v1.0, Thhalv10028242m.g.v1.0, Thhalv10028254m.g.v1.0, Thhalv10028534m.g.v1.0, Thhalv10029207m.g.v1.0, Thhalv10029489m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... Sp7g01410.v2.2, Sp7g16340.v2.2
Brassicaceae	Brassica nigra	39	BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... BniB01g026650.2N, BniB01g058940.2N, BniB01g058950.2N, BniB01g058960.2N, BniB01g058970.2N, BniB02g015730.2N, BniB02g039660.2N, BniB02g042710.2N, BniB02g050650.2N, BniB02g051320.2N, BniB02g067650.2N, BniB02g067710.2N, BniB03g040730.2N, BniB04g024850.2N, BniB04g024860.2N, BniB05g007940.2N, BniB05g017310.2N, BniB05g018620.2N, BniB05g020320.2N, BniB06g008470.2N, BniB06g023060.2N, BniB07g033480.2N, BniB07g033740.2N, BniB07g058140.2N, BniB07g060150.2N, BniB07g062010.2N, BniB07g062030.2N, BniB08g009490.2N, BniB08g012030.2N, BniB08g012050.2N, BniB08g022020.2N, BniB08g038300.2N, BniB08g044670.2N, BniB08g044680.2N, BniB08g044720.2N, BniB08g045080.2N
Casuarinaceae	Casuarina equisetifolia	17	Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... Ceq04G0075, Ceq04G0556, Ceq04G2464, Ceq04G2468, Ceq05G2487, Ceq05G2489, Ceq06G0228, Ceq07G2160, Ceq07G2257, Ceq08G0108, Ceq08G0138, Ceq09G0291
Casuarinaceae	Casuarina glauca	23	Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... Cgl04G0632, Cgl04G0634, Cgl04G0672, Cgl04G2695, Cgl05G2333, Cgl05G2698, Cgl07G1743, Cgl07G2340, Cgl07G2349, Cgl07G2372, Cgl07G2373, Cgl07G2522, Cgl08G0162, Cgl08G0163, Cgl08G0167, Cgl08G2652, Cgl09G0326, Cgl09G0327
Malvaceae	Hibiscus hamabo Siebold & Zucc.	6	nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... nbisL1-mrna-8118, nbisL1-mrna-8119, nbisL1-mrna-8190
Plumbaginaceae	Limonium bicolor	1	Lb3G17998
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-17876
Salicaceae	Populus euphratica	4	populus_peu26078, populus_peu26197, populus_peu26198 ... populus_peu26199