Basic Information
Locus ID:
BniB08g043110.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
protein ubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 26761345 | 26770273 | - | BniB08g043110.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.80 | 85,697.56 Da | 51.53 | 81.46 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 553 | 592 | 2.1E-4 | IPR006652 |
| Pfam | PF00646 | F-box domain | 416 | 454 | 0.0073 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 168 | 206 | 3.5E-7 | IPR006652 |
| Pfam | PF00646 | F-box domain | 16 | 59 | 3.4E-4 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 460 | 721 | 9.94E-26 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 101 | 7.63E-6 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 66 | 334 | 1.96E-26 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 475 | 690 | 1.9E-15 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 51 | 297 | 1.4E-15 | IPR015915 |
| SMART | SM00256 | fbox_2 | 414 | 454 | 1.2 | IPR001810 |
| SMART | SM00256 | fbox_2 | 19 | 59 | 0.15 | IPR001810 |
| SMART | SM00612 | kelc_smart | 515 | 559 | 12.0 | IPR006652 |
| SMART | SM00612 | kelc_smart | 175 | 222 | 0.079 | IPR006652 |
| SMART | SM00612 | kelc_smart | 560 | 608 | 2.5 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44700.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_018455278.1 | PREDICTED: F-box/kelch-repeat protein At2g44700-like [Raphanus sativus] | 0 |
| Q84RE1 | F-box/kelch-repeat protein At2g44700 OS=Arabidopsis thaliana OX=3702 GN=At2g44700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7WN36 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_002288 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G44630.1, AT2G44700.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000664m.g.v1.0, Thhalv10018745m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g03450.v2.2, Sp4g05040.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g017790.2N, BniB08g043110.2N |