Basic Information
Locus ID:
BniB08g041430.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
BTB POZ domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 25711953 | 25712857 | - | BniB08g041430.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 17,254.75 Da | 53.59 | 93.07 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 20 | 95 | 2.58375E-12 | - |
| Pfam | PF00651 | BTB/POZ domain | 22 | 109 | 1.5E-11 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 22 | 110 | 2.09E-12 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 8 | 128 | 7.3E-15 | IPR011333 |
| SMART | SM00225 | BTB_4 | 17 | 112 | 8.9E-5 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 21 | 80 | 10.095861 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46260.1 | BTB/POZ/Kelch-associated protein. | 0 |
| RefSeq | XP_048605953.1 | BTB/POZ domain-containing protein At4g01160-like [Brassica napus] | 0 |
| O82343 | BTB/POZ domain-containing protein At2g46260 OS=Arabidopsis thaliana OX=3702 GN=At2g46260 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X8BAG5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_002329 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g187400 |
| Brassicaceae | Brassica nigra | 1 | BniB08g041430.2N |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11221 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00028356, Pov_00028402, Pov_00028412 |
| Poaceae | Thinopyrum elongatum | 5 | Tel5E01G694100, Tel5E01G694400, Tel5E01G787700 ... |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2BG063870, gene_TRIDC4AG054000 |
| Poaceae | Triticum aestivum | 2 | TraesCS4A02G362100.2, TraesCS5D02G511000.1 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35424 |
| Salicaceae | Populus euphratica | 1 | populus_peu34485 |