Basic Information
Locus ID:
BniB08g041200.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
transcription factor jumonji (jmjC) domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 25513661 | 25525440 | + | BniB08g041200.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 214,539.30 Da | 60.49 | 67.14 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02373 | JmjC domain, hydroxylase | 1435 | 1536 | 6.2E-17 | IPR003347 |
| Pfam | PF02373 | JmjC domain, hydroxylase | 675 | 759 | 4.2E-10 | IPR003347 |
| Pfam | PF10497 | Zinc-finger domain of monoamine-oxidase A repressor R1 | 67 | 133 | 1.2E-6 | IPR018866 |
| Pfam | PF10497 | Zinc-finger domain of monoamine-oxidase A repressor R1 | 1746 | 1809 | 4.0E-5 | IPR018866 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 372 | 814 | 5.77E-23 | - |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 1190 | 1568 | 4.12E-30 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 634 | 793 | 2.8E-56 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1171 | 1253 | 4.9E-19 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 442 | 566 | 1.4E-25 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 357 | 441 | 2.5E-22 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1254 | 1562 | 8.2E-92 | - |
| SMART | SM00558 | cupin_9 | 432 | 784 | 1.7E-49 | IPR003347 |
| SMART | SM00558 | cupin_9 | 1235 | 1553 | 1.3E-60 | IPR003347 |
| SMART | SM00184 | ring_2 | 1750 | 1797 | 0.27 | IPR001841 |
| SMART | SM00184 | ring_2 | 72 | 121 | 1.7 | IPR001841 |
| SMART | SM00184 | ring_2 | 931 | 980 | 4.4 | IPR001841 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 438 | 784 | 19.044147 | IPR003347 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 1252 | 1553 | 25.743814 | IPR003347 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1750 | 1797 | 8.550227 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1341 | 1378 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1559 | 1622 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1332 | 1387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1640 | 1681 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 519 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 817 | 921 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1707 | 1725 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 822 | 863 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 891 | 921 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1559 | 1738 | - | - |
| Coils | Coil | Coil | 811 | 831 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00990.1 | Transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_018474376.1 | PREDICTED: lysine-specific demethylase JMJ25-like isoform X2 [Raphanus sativus] | 0 |
| Q8VYB9 | Lysine-specific demethylase JMJ27 OS=Arabidopsis thaliana OX=3702 GN=JMJ27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WK18 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_002354 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology