Basic Information
Locus ID:
BniB08g039210.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
cellular macromolecule catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 24002158 | 24003051 | - | BniB08g039210.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 34,315.93 Da | 51.87 | 68.52 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 3 | 70 | 1.75525E-11 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 222 | 287 | 1.47426E-4 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 72 | 1.1E-9 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 201 | 287 | 2.12E-8 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 73 | 7.37E-13 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 210 | 287 | 1.2E-6 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 90 | 3.0E-14 | - |
| SMART | SM00213 | ubq_7 | 209 | 289 | 0.51 | IPR000626 |
| SMART | SM00213 | ubq_7 | 1 | 73 | 2.3E-7 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 73 | 13.075337 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 211 | 287 | 10.701818 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02950.1 | Ubiquitin family protein. | 0 |
| RefSeq | XP_009134384.1 | ubiquitin domain-containing protein 7SL RNA1-like [Brassica rapa] | 0 |
| Q9ZT95 | Ubiquitin domain-containing protein 7SL RNA1 OS=Arabidopsis thaliana OX=3702 GN=7SL1 PE=3 SV=2 | 0 | |
| TrEMBL | A0A816VX39 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_A03P30710.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10029305m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03000.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB08g039200.2N, BniB08g039210.2N, BniB08g045630.2N |