Basic Information
Locus ID:
BniB08g039200.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
cellular macromolecule catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 23997781 | 23998725 | - | BniB08g039200.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 35,939.57 Da | 51.39 | 75.06 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 244 | 304 | 1.73956E-6 | - |
| Pfam | PF00240 | Ubiquitin family | 243 | 302 | 1.1E-6 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 217 | 304 | 3.22E-11 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 242 | 303 | 7.1E-8 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 233 | 303 | 11.463958 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05230.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_033142072.1 | uncharacterized protein LOC103858726 [Brassica rapa] | 0 |
| Q9ZQZ6 | Ubiquitin domain-containing protein 7SL RNA2 OS=Arabidopsis thaliana OX=3702 GN=7SL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8BEC8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_002493 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10029305m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03000.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB08g039200.2N, BniB08g039210.2N, BniB08g045630.2N |