Basic Information
Locus ID:
BniB08g039010.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
grr1-like protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 23833647 | 23835500 | + | BniB08g039010.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 65,386.89 Da | 46.49 | 99.16 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 62 | 108 | 3.1E-24 | IPR041101 |
| Pfam | PF18511 | F-box | 5 | 43 | 1.3E-17 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 19 | 530 | 9.94E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 42 | 571 | 4.1E-177 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 41 | 2.8E-17 | - |
| SMART | SM00367 | LRR_CC_2 | 100 | 124 | 90.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 5 | 46 | 4.1E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 151 | 185 | 83.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 427 | 450 | 61.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 125 | 150 | 400.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 367 | 391 | 1.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 476 | 500 | 56.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 332 | 310.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 284 | 308 | 410.0 | IPR006553 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 48 | 8.676143 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03190.1 | GRR1-like protein 1. Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression. | 0 |
| RefSeq | XP_018472813.1 | PREDICTED: GRR1-like protein 1 [Raphanus sativus] | 0 |
| Q9ZR12 | GRR1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=GRH1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8BEX9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_002512 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology